Glyma01g10900 - SoyBase

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Report for Sequence Feature Glyma01g10900

Feature Type:	gene_model
Chromosome:	Gm01
Start:	14129303
stop:	14130710
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma01g10900

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G73260	AT	Annotation by Michelle Graham. TAIR10: kunitz trypsin inhibitor 1 \| chr1:27547410-27548057 REVERSE LENGTH=215	SoyBase	E_val: 1.00E-24	ISS
GO:0009651	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to salt stress	SoyBase	N/A	ISS
GO:0009751	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to salicylic acid stimulus	SoyBase	N/A	ISS
GO:0010167	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to nitrate	SoyBase	N/A	ISS
GO:0012501	GO-bp	Annotation by Michelle Graham. GO Biological Process: programmed cell death	SoyBase	N/A	ISS
GO:0015706	GO-bp	Annotation by Michelle Graham. GO Biological Process: nitrate transport	SoyBase	N/A	ISS
GO:0042542	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to hydrogen peroxide	SoyBase	N/A	ISS
GO:0042742	GO-bp	Annotation by Michelle Graham. GO Biological Process: defense response to bacterium	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0004866	GO-mf	Annotation by Michelle Graham. GO Molecular Function: endopeptidase inhibitor activity	SoyBase	N/A	ISS
PF00197	PFAM	Trypsin and protease inhibitor	JGI		ISS
UniRef100_C6SWW4	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6SWW4_SOYBN	SoyBase	E_val: 1.00E-147	ISS
UniRef100_P25272	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Kunitz-type trypsin inhibitor KTI1 n=1 Tax=Glycine max RepID=KTI1_SOYBN	SoyBase	E_val: 2.33E-156	ISS

Proteins Associated with Glyma01g10900

Locus	Gene Symbol	Protein Name
	KTI1	Kunitz-type trypsin inhibitor gene 1

Expression Patterns of Glyma01g10900

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma01g10900 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.01g095000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma01g10900

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma01g10900

Limit To All Plant Sequences

>Glyma01g10900.1   sequence type=CDS   gene model=Glyma01g10900   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAGAGTACTATCTTCTTTGCTCTCTTTCTAGTTTGTGCCTTCACCATCTCATACCTGCCTTCAGCCACCGCTCAGTTCGTGCTCGACACTGATGATGATCCTCTTCAAAACGGTGGCACATACTATATGTTGCCAGTTATGAGAGGAAAGGGCGGTGGAATAGAAGTAGATTCAACTGGAAAAGAAATATGCCCTCTCACTGTTGTGCAATCACCCAATGAGCTCGATAAGGGGATTGGACTAGTCTTTACATCTCCATTACATGCCCTTTTTATCGCCGAAGGCTATCCTTTGAGCATTAAGTTTGGTTCATTTGCAGTTATAACGCTGTGTGCCGGCATGCCTACTGAGTGGGCTATTGTGGAGAGAGAGGGTCTACAAGCTGTTAAACTTGCTGCACGCGATACAGTAGATGGTTGGTTTAATATTGAGAGAGTTTCCCGTGAATACAATGACTATAAGCTTGTGTTCTGTCCACAGCAAGCTGAAGATAACAAATGCGAGGATATTGGGATTCAGATCGACGATGATGGAATCAGGCGTTTAGTGCTGTCTAAGAACAAACCATTAGTGGTTCAGTTTCAGAAATTTAGATCATCAACTGCATGA

Predicted protein sequences of Glyma01g10900

Limit To All Plant Sequences

>Glyma01g10900.1   sequence type=predicted peptide   gene model=Glyma01g10900   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKSTIFFALFLVCAFTISYLPSATAQFVLDTDDDPLQNGGTYYMLPVMRGKGGGIEVDSTGKEICPLTVVQSPNELDKGIGLVFTSPLHALFIAEGYPLSIKFGSFAVITLCAGMPTEWAIVEREGLQAVKLAARDTVDGWFNIERVSREYNDYKLVFCPQQAEDNKCEDIGIQIDDDGIRRLVLSKNKPLVVQFQKFRSSTA*

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